IL_7O5B_054

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7O5B|1|A|C|1409, 7O5B|1|A|A|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_054 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1448

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7O5B|1|A|C|1408
7O5B|1|A|C|1409
7O5B|1|A|G|1410
*
7O5B|1|A|C|1511
7O5B|1|A|A|1512
7O5B|1|A|A|1513
7O5B|1|A|G|1514

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain U

Transfer RNA; tRNA

Chain V

mRNA