IL_7O5B_055

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_055 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.1465

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7O5B|1|A|G|1410
7O5B|1|A|C|1411
7O5B|1|A|C|1412
7O5B|1|A|C|1413
*
7O5B|1|A|G|1507
7O5B|1|A|U|1508
7O5B|1|A|A|1509
7O5B|1|A|A|1510
7O5B|1|A|C|1511

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain U

Transfer RNA; tRNA

Chain V

mRNA

Chain X

Large subunit ribosomal RNA; LSU rRNA