IL_7O5B_057

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

7O5B|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_057 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3447

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7O5B|1|A|C|1416
7O5B|1|A|A|1417
7O5B|1|A|C|1418
*
7O5B|1|A|G|1501
7O5B|1|A|A|1502
7O5B|1|A|A|1503
7O5B|1|A|G|1504

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain L

30S ribosomal protein S12

Chain V

mRNA

Chain X

Large subunit ribosomal RNA; LSU rRNA