IL_7O5B_061
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CCGAAG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_061 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.243
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_51313.1
- Basepair signature
- cWW-L-R-L-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
7O5B|1|A|C|1439
7O5B|1|A|C|1440
7O5B|1|A|G|1441
7O5B|1|A|A|1442
7O5B|1|A|A|1443
7O5B|1|A|G|1444
*
7O5B|1|A|C|1476
7O5B|1|A|G|1477
7O5B|1|A|A|1478
7O5B|1|A|A|1479
7O5B|1|A|G|1480
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain T
- 30S ribosomal protein S20
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L14
- Chain m
- 50S ribosomal protein L19
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