IL_7O5B_095

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_095 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.1475

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

7O5B|1|X|U|336
7O5B|1|X|A|337
7O5B|1|X|G|338
*
7O5B|1|X|C|387
7O5B|1|X|A|388
7O5B|1|X|A|389
7O5B|1|X|A|390
7O5B|1|X|A|391

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain t

50S ribosomal protein L24