IL_7O5B_103

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7O5B|1|X|G|848, 7O5B|1|X|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_103 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1426

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7O5B|1|X|G|721
7O5B|1|X|A|722
7O5B|1|X|A|723
7O5B|1|X|A|724
7O5B|1|X|C|725
*
7O5B|1|X|G|846
7O5B|1|X|A|847
7O5B|1|X|G|848
7O5B|1|X|A|849
7O5B|1|X|U|850
7O5B|1|X|A|851
7O5B|1|X|G|852
7O5B|1|X|C|853

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain b

50S ribosomal protein L4

Chain i

50S ribosomal protein L15