IL_7O5B_107
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 7O5B|1|X|G|823, 7O5B|1|X|A|835, 7O5B|1|X|A|836
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_107 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.1203
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7O5B|1|X|G|822
7O5B|1|X|G|823
7O5B|1|X|G|824
*
7O5B|1|X|C|834
7O5B|1|X|A|835
7O5B|1|X|A|836
7O5B|1|X|U|837
7O5B|1|X|C|838
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain Z
- 50S ribosomal protein L2
- Chain b
- 50S ribosomal protein L4
- Chain h
- MifM-stalling construct
- Chain r
- 50S ribosomal protein L22
Coloring options: