IL_7O5B_109

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_109 not in the Motif Atlas

Homologous match to IL_4WF9_029

Geometric discrepancy: 0.3543

The information below is about IL_4WF9_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

7O5B|1|X|G|891
7O5B|1|X|U|892
7O5B|1|X|A|893
7O5B|1|X|A|894
7O5B|1|X|G|895
*
7O5B|1|X|U|977
7O5B|1|X|A|978
7O5B|1|X|U|979
7O5B|1|X|C|980

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain x

50S ribosomal protein L30