IL_7O5B_120

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_120 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.1033

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_46868.1

Basepair signature

cWW-L-cWW-L-L-R-L-R

Number of instances in this motif group

5

Unit IDs

7O5B|1|X|U|1050
7O5B|1|X|C|1051
7O5B|1|X|C|1052
7O5B|1|X|C|1053
7O5B|1|X|A|1054
7O5B|1|X|A|1055
7O5B|1|X|A|1056
7O5B|1|X|G|1057
*
7O5B|1|X|C|1196
7O5B|1|X|A|1197

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain e

50S ribosomal protein L13

Chain n

50S ribosomal protein L20