IL_7O5B_125

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUUAGACAA*UCGAG

Length

14 nucleotides

Bulged bases

7O5B|1|X|A|1092

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_125 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.3596

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7O5B|1|X|C|1089
7O5B|1|X|U|1090
7O5B|1|X|U|1091
7O5B|1|X|A|1092
7O5B|1|X|G|1093
7O5B|1|X|A|1094
7O5B|1|X|C|1095
7O5B|1|X|A|1096
7O5B|1|X|A|1097
*
7O5B|1|X|U|1154
7O5B|1|X|C|1155
7O5B|1|X|G|1156
7O5B|1|X|A|1157
7O5B|1|X|G|1158

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain d

50S ribosomal protein L6

Chain p

50S ribosomal protein L10