IL_7O5B_138

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAAUG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_138 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2653

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7O5B|1|X|C|1463
7O5B|1|X|A|1464
7O5B|1|X|A|1465
7O5B|1|X|U|1466
7O5B|1|X|G|1467
*
7O5B|1|X|C|1625
7O5B|1|X|U|1626
7O5B|1|X|A|1627
7O5B|1|X|G|1628

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains