IL_7O5B_140

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AUAG*UGAUU

Length

9 nucleotides

Bulged bases

7O5B|1|X|U|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_140 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.2013

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7O5B|1|X|A|1483
7O5B|1|X|U|1484
7O5B|1|X|A|1485
7O5B|1|X|G|1486
*
7O5B|1|X|U|1599
7O5B|1|X|G|1600
7O5B|1|X|A|1601
7O5B|1|X|U|1602
7O5B|1|X|U|1603

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains