IL_7O5B_144

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUAG*UGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_144 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.2777

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

7O5B|1|X|U|1522
7O5B|1|X|U|1523
7O5B|1|X|A|1524
7O5B|1|X|G|1525
*
7O5B|1|X|U|1560
7O5B|1|X|G|1561
7O5B|1|X|A|1562
7O5B|1|X|G|1563

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains