IL_7O5B_159

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUAAG*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_159 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1718

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7O5B|1|X|U|1880
7O5B|1|X|U|1881
7O5B|1|X|A|1882
7O5B|1|X|A|1883
7O5B|1|X|G|1884
*
7O5B|1|X|U|1916
7O5B|1|X|G|1917
7O5B|1|X|A|1918
7O5B|1|X|A|1919
7O5B|1|X|G|1920

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains