IL_7O5B_160

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_160 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.2159

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7O5B|1|X|A|1885
7O5B|1|X|G|1886
7O5B|1|X|G|1887
7O5B|1|X|A|1888
7O5B|1|X|G|1889
*
7O5B|1|X|C|1911
7O5B|1|X|G|1912
7O5B|1|X|A|1913
7O5B|1|X|A|1914
7O5B|1|X|U|1915

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains