IL_7O5B_163

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

7O5B|1|X|A|1967, 7O5B|1|X|U|1973, 7O5B|1|X|C|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_163 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1666

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.2

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

9

Unit IDs

7O5B|1|X|C|1963
7O5B|1|X|G|1964
7O5B|1|X|A|1965
7O5B|1|X|A|1966
7O5B|1|X|A|1967
7O5B|1|X|U|1968
7O5B|1|X|U|1969
7O5B|1|X|C|1970
7O5B|1|X|C|1971
7O5B|1|X|U|1972
7O5B|1|X|U|1973
7O5B|1|X|G|1974
*
7O5B|1|X|C|1990
7O5B|1|X|C|1991
7O5B|1|X|C|1992
7O5B|1|X|G|1993

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

50S ribosomal protein L2