IL_7O5B_167

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7O5B|1|X|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_167 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.1162

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

7O5B|1|X|G|2099
7O5B|1|X|A|2100
*
7O5B|1|X|U|2467
7O5B|1|X|A|2468
7O5B|1|X|C|2469
7O5B|1|X|C|2470

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain U

Transfer RNA; tRNA

Chain Z

50S ribosomal protein L2

Chain h

MifM-stalling construct