IL_7O5B_177

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_177 not in the Motif Atlas

Geometric match to IL_4V9F_082

Geometric discrepancy: 0.1146

The information below is about IL_4V9F_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

7O5B|1|X|G|2483
7O5B|1|X|G|2484
*
7O5B|1|X|C|2525
7O5B|1|X|A|2526
7O5B|1|X|C|2527

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain a

50S ribosomal protein L3

Chain j

50S ribosomal protein L16