IL_7O5B_187
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_187 not in the Motif Atlas
- Geometric match to IL_7A0S_094
- Geometric discrepancy: 0.1324
- The information below is about IL_7A0S_094
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.6
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7O5B|1|X|U|2681
7O5B|1|X|U|2682
7O5B|1|X|A|2683
7O5B|1|X|G|2684
7O5B|1|X|U|2685
7O5B|1|X|A|2686
7O5B|1|X|C|2687
*
7O5B|1|X|G|2692
7O5B|1|X|G|2693
7O5B|1|X|A|2694
7O5B|1|X|C|2695
7O5B|1|X|C|2696
7O5B|1|X|G|2697
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain W
- Large signal recognition particle RNA; LSRP RNA
- Chain d
- 50S ribosomal protein L6
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