IL_7O5B_198
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- 7O5B|1|Y|U|33
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_198 not in the Motif Atlas
- Homologous match to IL_7RQB_114
- Geometric discrepancy: 0.1755
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
7O5B|1|Y|U|32
7O5B|1|Y|U|33
7O5B|1|Y|C|34
7O5B|1|Y|C|35
7O5B|1|Y|C|36
*
7O5B|1|Y|G|42
7O5B|1|Y|A|43
7O5B|1|Y|A|44
7O5B|1|Y|C|45
7O5B|1|Y|A|46
Current chains
- Chain Y
- 5S rRNA (112-MER)
Nearby chains
- Chain 6
- 50S ribosomal protein L31
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
- Chain c
- 50S ribosomal protein L5
- Chain l
- 50S ribosomal protein L18
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