IL_7O5B_213
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- ACGGGACGAACACCGAUAUGC*GAUUU
- Length
- 26 nucleotides
- Bulged bases
- 7O5B|1|X|A|61, 7O5B|1|X|U|72
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_213 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.3946
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
7O5B|1|X|A|56
7O5B|1|X|C|57
7O5B|1|X|G|58
7O5B|1|X|G|59
7O5B|1|X|G|60
7O5B|1|X|A|61
7O5B|1|X|C|62
7O5B|1|X|G|63
7O5B|1|X|A|64
7O5B|1|X|A|65
7O5B|1|X|C|66
7O5B|1|X|A|67
7O5B|1|X|C|68
7O5B|1|X|C|69
7O5B|1|X|G|70
7O5B|1|X|A|71
7O5B|1|X|U|72
7O5B|1|X|A|73
7O5B|1|X|U|74
7O5B|1|X|G|75
7O5B|1|X|C|76
*
7O5B|1|X|G|109
7O5B|1|X|A|110
7O5B|1|X|U|111
7O5B|1|X|U|112
7O5B|1|X|U|113
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain s
- 50S ribosomal protein L23
- Chain w
- 50S ribosomal protein L29
Coloring options: