IL_7O5B_215

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUU*AAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_215 not in the Motif Atlas

Homologous match to IL_7A0S_026

Geometric discrepancy: 0.5697

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7O5B|1|X|C|899
7O5B|1|X|U|900
7O5B|1|X|U|901
*
7O5B|1|X|A|970
7O5B|1|X|A|971
7O5B|1|X|U|972
7O5B|1|X|G|973

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain u

50S ribosomal protein L27

Chain x

50S ribosomal protein L30