IL_7O7Y_029

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

7O7Y|1|A2|G|601

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Y_029 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.0689

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

7O7Y|1|A2|A|600
7O7Y|1|A2|G|601
7O7Y|1|A2|OMG|602
7O7Y|1|A2|G|603
7O7Y|1|A2|C|604
7O7Y|1|A2|A|605
7O7Y|1|A2|A|606
7O7Y|1|A2|G|607
*
7O7Y|1|A2|C|637
7O7Y|1|A2|U|638

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ab

Ribosomal protein uS5

Chain Ai

Ribosomal protein S9 (Predicted)