IL_7O7Y_059
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAGUA(PSU)G*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Y_059 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.167
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7O7Y|1|A2|G|1169
7O7Y|1|A2|G|1170
7O7Y|1|A2|A|1171
7O7Y|1|A2|G|1172
7O7Y|1|A2|U|1173
7O7Y|1|A2|A|1174
7O7Y|1|A2|PSU|1175
7O7Y|1|A2|G|1176
*
7O7Y|1|A2|U|1187
7O7Y|1|A2|G|1188
7O7Y|1|A2|A|1189
7O7Y|1|A2|A|1190
7O7Y|1|A2|A|1191
7O7Y|1|A2|C|1192
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Aw
- 40S ribosomal protein S23
- Chain Az
- 60s ribosomal protein l41
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: