IL_7O7Y_084
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 7O7Y|1|A2|A|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Y_084 not in the Motif Atlas
- Geometric match to IL_4LFB_052
- Geometric discrepancy: 0.1952
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7O7Y|1|A2|G|1551
7O7Y|1|A2|U|1552
7O7Y|1|A2|G|1553
7O7Y|1|A2|C|1554
7O7Y|1|A2|C|1555
7O7Y|1|A2|U|1556
7O7Y|1|A2|A|1557
7O7Y|1|A2|C|1558
7O7Y|1|A2|C|1559
*
7O7Y|1|A2|G|1578
7O7Y|1|A2|U|1579
7O7Y|1|A2|A|1580
7O7Y|1|A2|A|1581
7O7Y|1|A2|C|1582
7O7Y|1|A2|C|1583
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AG
- uS14
- Chain Ac
- 40S ribosomal protein S3
- Chain Aj
- eS10
- Chain As
- Ribosomal protein eS19
- Chain At
- 40S ribosomal protein uS10
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