IL_7O7Y_163
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- G(OMG)G*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 7O7Y|1|B5|A|1592, 7O7Y|1|B5|A|1593
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Y_163 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.0554
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7O7Y|1|B5|G|1579
7O7Y|1|B5|OMG|1580
7O7Y|1|B5|G|1581
*
7O7Y|1|B5|U|1591
7O7Y|1|B5|A|1592
7O7Y|1|B5|A|1593
7O7Y|1|B5|U|1594
7O7Y|1|B5|C|1595
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BA
- Ribosomal protein uL2
- Chain BK
- Replicase polyprotein 1ab
- Chain BN
- Ribosomal protein L15
- Chain BP
- uL22
- Chain Bj
- Ribosomal protein L37
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