IL_7O7Y_180
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 7O7Y|1|B5|C|1874, 7O7Y|1|B5|A|1980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Y_180 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1512
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7O7Y|1|B5|G|1872
7O7Y|1|B5|A|1873
7O7Y|1|B5|C|1874
7O7Y|1|B5|C|1875
7O7Y|1|B5|C|1876
7O7Y|1|B5|C|1877
7O7Y|1|B5|A|1878
7O7Y|1|B5|G|1879
7O7Y|1|B5|A|1880
7O7Y|1|B5|A|1881
7O7Y|1|B5|A|1882
7O7Y|1|B5|A|1883
*
7O7Y|1|B5|U|1977
7O7Y|1|B5|G|1978
7O7Y|1|B5|A|1979
7O7Y|1|B5|A|1980
7O7Y|1|B5|A|1981
7O7Y|1|B5|A|1982
7O7Y|1|B5|U|1983
7O7Y|1|B5|G|1984
7O7Y|1|B5|G|1985
7O7Y|1|B5|A|1986
7O7Y|1|B5|U|1987
7O7Y|1|B5|G|1988
7O7Y|1|B5|G|1989
7O7Y|1|B5|C|1990
7O7Y|1|B5|G|1991
7O7Y|1|B5|C|1992
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BB
- Ribosomal protein L3
- Chain BI
- 60S ribosomal protein L10
- Chain BO
- Ribosomal protein uL13
- Chain BS
- Ribosomal protein eL20
- Chain Bf
- eL33
- Chain Bm
- 60S ribosomal protein L40
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