IL_7O7Y_321
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGGUAA*(PSU)AAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Y_321 not in the Motif Atlas
- Homologous match to IL_8GLP_291
- Geometric discrepancy: 0.0385
- The information below is about IL_8GLP_291
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46203.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
7O7Y|1|B5|C|1671
7O7Y|1|B5|G|1672
7O7Y|1|B5|G|1673
7O7Y|1|B5|U|1674
7O7Y|1|B5|A|1675
7O7Y|1|B5|A|1676
*
7O7Y|1|B5|PSU|1731
7O7Y|1|B5|A|1732
7O7Y|1|B5|A|1733
7O7Y|1|B5|A|1734
7O7Y|1|B5|U|1735
7O7Y|1|B5|G|1736
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BF
- Ribosomal Protein uL30
- Chain BI
- 60S ribosomal protein L10
- Chain BS
- Ribosomal protein eL20
- Chain BT
- eL21
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