IL_7O7Y_340

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCC*GGCG

Length

7 nucleotides

Bulged bases

7O7Y|1|B5|C|3891

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Y_340 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.24

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

7O7Y|1|B5|C|3866
7O7Y|1|B5|C|3867
7O7Y|1|B5|C|3868
*
7O7Y|1|B5|G|3889
7O7Y|1|B5|G|3890
7O7Y|1|B5|C|3891
7O7Y|1|B5|G|3892

Current chains

Chain B5

28S rRNA

Nearby chains