IL_7O7Y_355
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GACAGGA(OMU)UG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 7O7Y|1|A2|G|1286, 7O7Y|1|A2|U|1316
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Y_355 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.269
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7O7Y|1|A2|G|1282
7O7Y|1|A2|A|1283
7O7Y|1|A2|C|1284
7O7Y|1|A2|A|1285
7O7Y|1|A2|G|1286
7O7Y|1|A2|G|1287
7O7Y|1|A2|A|1288
7O7Y|1|A2|OMU|1289
7O7Y|1|A2|U|1290
7O7Y|1|A2|G|1291
*
7O7Y|1|A2|C|1310
7O7Y|1|A2|U|1311
7O7Y|1|A2|C|1312
7O7Y|1|A2|G|1313
7O7Y|1|A2|A|1314
7O7Y|1|A2|U|1315
7O7Y|1|A2|U|1316
7O7Y|1|A2|C|1317
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AC
- Ribosomal protein S27a
- Chain AG
- uS14
- Chain Aj
- eS10
- Chain Al
- 40S ribosomal protein S12
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