IL_7O7Z_001

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGCAU*A(PSU)A(PSU)U

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_001 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3986

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7O7Z|1|A2|A|22
7O7Z|1|A2|G|23
7O7Z|1|A2|C|24
7O7Z|1|A2|A|25
7O7Z|1|A2|U|26
*
7O7Z|1|A2|A|649
7O7Z|1|A2|PSU|650
7O7Z|1|A2|A|651
7O7Z|1|A2|PSU|652
7O7Z|1|A2|U|653

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Aw

40S ribosomal protein S23