IL_7O7Z_004

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

7O7Z|1|A2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_004 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.0836

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7O7Z|1|A2|G|41
7O7Z|1|A2|A|42
7O7Z|1|A2|U|43
7O7Z|1|A2|U|44
7O7Z|1|A2|A|45
7O7Z|1|A2|A|46
7O7Z|1|A2|G|47
*
7O7Z|1|A2|C|480
7O7Z|1|A2|G|481
7O7Z|1|A2|C|482

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aw

40S ribosomal protein S23