IL_7O7Z_038

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

G(PSU)U*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_038 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1988

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7O7Z|1|A2|G|681
7O7Z|1|A2|PSU|682
7O7Z|1|A2|U|683
*
7O7Z|1|A2|A|1024
7O7Z|1|A2|A|1025
7O7Z|1|A2|U|1026

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ak

40S ribosomal protein S11

Chain Am

uS15

Chain Av

Ribosomal protein S15a

Chain Aw

40S ribosomal protein S23