IL_7O7Z_041
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GCG*CC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_041 not in the Motif Atlas
- Geometric match to IL_4LFB_038
- Geometric discrepancy: 0.3758
- The information below is about IL_4LFB_038
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_51454.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 45
Unit IDs
7O7Z|1|A2|G|753
7O7Z|1|A2|C|754
7O7Z|1|A2|G|755
*
7O7Z|1|A2|C|791
7O7Z|1|A2|C|792
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- Ribosomal protein eS4
- Chain Af
- 40S ribosomal protein S6
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