IL_7O7Z_071

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_071 not in the Motif Atlas

Homologous match to IL_4V88_448

Geometric discrepancy: 0.2219

The information below is about IL_4V88_448

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

7O7Z|1|A2|A|1292
7O7Z|1|A2|C|1293
7O7Z|1|A2|A|1294
*
7O7Z|1|A2|U|1307
7O7Z|1|A2|U|1308
7O7Z|1|A2|U|1309

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

uS14