IL_7O7Z_073

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

7O7Z|1|A2|C|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_073 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.1175

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7O7Z|1|A2|U|1330
7O7Z|1|A2|G|1331
7O7Z|1|A2|C|1332
7O7Z|1|A2|A|1333
7O7Z|1|A2|U|1334
*
7O7Z|1|A2|A|1499
7O7Z|1|A2|U|1500
7O7Z|1|A2|G|1501

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

uS14

Chain AH

Coronavirus frameshifting stimulation element

Chain Ac

40S ribosomal protein S3

Chain Aj

eS10

Chain At

40S ribosomal protein uS10