IL_7O7Z_080

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

7O7Z|1|A2|C|1404, 7O7Z|1|A2|U|1405

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_080 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1163

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7O7Z|1|A2|A|1403
7O7Z|1|A2|C|1404
7O7Z|1|A2|U|1405
7O7Z|1|A2|A|1406
*
7O7Z|1|A2|U|1442
7O7Z|1|A2|OMU|1443
7O7Z|1|A2|C|1444
7O7Z|1|A2|U|1445

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

RACK1

Chain Ap

uS9

Chain At

40S ribosomal protein uS10