IL_7O7Z_081

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

7O7Z|1|A2|C|1434, 7O7Z|1|A2|C|1435, 7O7Z|1|A2|C|1438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_081 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2417

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

7O7Z|1|A2|U|1409
7O7Z|1|A2|A|1410
*
7O7Z|1|A2|U|1433
7O7Z|1|A2|C|1434
7O7Z|1|A2|C|1435
7O7Z|1|A2|C|1436
7O7Z|1|A2|C|1437
7O7Z|1|A2|C|1438
7O7Z|1|A2|A|1439

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ap

uS9

Chain At

40S ribosomal protein uS10