3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CCG*CAAG
Length
7 nucleotides
Bulged bases
7O7Z|1|A2|C|1702, 7O7Z|1|A2|A|1836
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O7Z_088 not in the Motif Atlas
Homologous match to IL_4V88_463
Geometric discrepancy: 0.087
The information below is about IL_4V88_463
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61438.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
5

Unit IDs

7O7Z|1|A2|C|1701
7O7Z|1|A2|C|1702
7O7Z|1|A2|G|1703
*
7O7Z|1|A2|C|1834
7O7Z|1|A2|A|1835
7O7Z|1|A2|A|1836
7O7Z|1|A2|G|1837

Current chains

Chain A2
18S rRNA

Nearby chains

Chain AE
Ribosomal protein eS26
Chain AH
Coronavirus frameshifting stimulation element
Chain AT
Transfer RNA; tRNA
Chain An
40S ribosomal protein uS11

Coloring options:


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