IL_7O7Z_093

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_093 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.0699

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7O7Z|1|A2|C|1718
7O7Z|1|A2|G|1719
7O7Z|1|A2|A|1720
7O7Z|1|A2|U|1721
*
7O7Z|1|A2|A|1814
7O7Z|1|A2|G|1815
7O7Z|1|A2|A|1816
7O7Z|1|A2|G|1817

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Az

60s ribosomal protein l41

Chain B5

Large subunit ribosomal RNA; LSU rRNA