IL_7O7Z_104

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

7O7Z|1|B8|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_104 not in the Motif Atlas

Homologous match to IL_8C3A_002

Geometric discrepancy: 0.564

The information below is about IL_8C3A_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7O7Z|1|B5|C|6
7O7Z|1|B5|C|7
*
7O7Z|1|B8|G|149
7O7Z|1|B8|C|150
7O7Z|1|B8|G|151

Current chains

Chain B5

28S rRNA

Chain B8

5.8S rRNA

Nearby chains

Chain BG

Ribosomal protein eL8

Chain BN

Ribosomal protein L15

Chain BX

uL23