IL_7O7Z_110

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

7O7Z|1|B5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_110 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.2601

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

7O7Z|1|B5|C|118
7O7Z|1|B5|G|119
7O7Z|1|B5|A|120
7O7Z|1|B5|A|121
*
7O7Z|1|B5|U|152
7O7Z|1|B5|G|153

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BG

Ribosomal protein eL8

Chain BN

Ribosomal protein L15

Chain Bh

uL29