IL_7O7Z_136

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UC*GUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_136 not in the Motif Atlas

Geometric match to IL_3IGI_013

Geometric discrepancy: 0.2595

The information below is about IL_3IGI_013

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

7O7Z|1|B5|U|522
7O7Z|1|B5|C|523
*
7O7Z|1|B5|G|632
7O7Z|1|B5|U|633
7O7Z|1|B5|C|634
7O7Z|1|B5|G|635

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Ribosomal protein eL13