IL_7O7Z_142

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7O7Z|1|B5|G|743, 7O7Z|1|B5|C|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_142 not in the Motif Atlas

Geometric match to IL_8C3A_022

Geometric discrepancy: 0.2381

The information below is about IL_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7O7Z|1|B5|G|740
7O7Z|1|B5|A|741
7O7Z|1|B5|A|742
7O7Z|1|B5|G|743
7O7Z|1|B5|G|744
7O7Z|1|B5|U|745
7O7Z|1|B5|G|746
7O7Z|1|B5|G|747
*
7O7Z|1|B5|U|808
7O7Z|1|B5|G|809
7O7Z|1|B5|U|810
7O7Z|1|B5|U|811
7O7Z|1|B5|A|812
7O7Z|1|B5|C|813
7O7Z|1|B5|A|814
7O7Z|1|B5|G|815
7O7Z|1|B5|C|816

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

Ribosomal protein L14

Chain BS

Ribosomal protein eL20