IL_7O7Z_167

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

7O7Z|1|B5|A|1592, 7O7Z|1|B5|A|1593

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_167 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.0665

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7O7Z|1|B5|G|1579
7O7Z|1|B5|OMG|1580
7O7Z|1|B5|G|1581
*
7O7Z|1|B5|U|1591
7O7Z|1|B5|A|1592
7O7Z|1|B5|A|1593
7O7Z|1|B5|U|1594
7O7Z|1|B5|C|1595

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Ribosomal protein uL2

Chain BK

Replicase polyprotein 1ab

Chain BN

Ribosomal protein L15

Chain BP

uL22

Chain Bj

Ribosomal protein L37