IL_7O7Z_174

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUUAGAG*C(PSU)A(PSU)(PSU)CUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|G|1684
7O7Z|1|B5|A|1685
7O7Z|1|B5|U|1686
7O7Z|1|B5|U|1687
7O7Z|1|B5|A|1688
7O7Z|1|B5|G|1689
7O7Z|1|B5|A|1690
7O7Z|1|B5|G|1691
*
7O7Z|1|B5|C|1717
7O7Z|1|B5|PSU|1718
7O7Z|1|B5|A|1719
7O7Z|1|B5|PSU|1720
7O7Z|1|B5|PSU|1721
7O7Z|1|B5|C|1722
7O7Z|1|B5|U|1723
7O7Z|1|B5|C|1724

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BI

60S ribosomal protein L10