IL_7O7Z_184

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

7O7Z|1|B5|C|1874, 7O7Z|1|B5|A|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_184 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1551

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7O7Z|1|B5|G|1872
7O7Z|1|B5|A|1873
7O7Z|1|B5|C|1874
7O7Z|1|B5|C|1875
7O7Z|1|B5|C|1876
7O7Z|1|B5|C|1877
7O7Z|1|B5|A|1878
7O7Z|1|B5|G|1879
7O7Z|1|B5|A|1880
7O7Z|1|B5|A|1881
7O7Z|1|B5|A|1882
7O7Z|1|B5|A|1883
*
7O7Z|1|B5|U|1977
7O7Z|1|B5|G|1978
7O7Z|1|B5|A|1979
7O7Z|1|B5|A|1980
7O7Z|1|B5|A|1981
7O7Z|1|B5|A|1982
7O7Z|1|B5|U|1983
7O7Z|1|B5|G|1984
7O7Z|1|B5|G|1985
7O7Z|1|B5|A|1986
7O7Z|1|B5|U|1987
7O7Z|1|B5|G|1988
7O7Z|1|B5|G|1989
7O7Z|1|B5|C|1990
7O7Z|1|B5|G|1991
7O7Z|1|B5|C|1992

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BB

Ribosomal protein L3

Chain BI

60S ribosomal protein L10

Chain BO

Ribosomal protein uL13

Chain Bf

eL33

Chain Bm

60S ribosomal protein L40