IL_7O7Z_194

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_194 not in the Motif Atlas

Geometric match to IL_4V9F_050

Geometric discrepancy: 0.0964

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

7O7Z|1|B5|G|2249
7O7Z|1|B5|G|2250
7O7Z|1|B5|U|2251
7O7Z|1|B5|U|2252
*
7O7Z|1|B5|A|2626
7O7Z|1|B5|C|2627

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BX

uL23

Chain Bg

60S ribosomal protein L34

Chain Bj

Ribosomal protein L37

Chain Bl

eL39