IL_7O7Z_203

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

7O7Z|1|B5|U|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_203 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.1027

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7O7Z|1|B5|C|2489
7O7Z|1|B5|A|2490
7O7Z|1|B5|G|2491
*
7O7Z|1|B5|C|2528
7O7Z|1|B5|G|2529
7O7Z|1|B5|U|2530
7O7Z|1|B5|G|2531

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bg

60S ribosomal protein L34