IL_7O7Z_211

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7O7Z|1|B5|U|2723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_211 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0758

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7O7Z|1|B5|C|2710
7O7Z|1|B5|G|2711
7O7Z|1|B5|U|2712
7O7Z|1|B5|A|2713
7O7Z|1|B5|A|2714
7O7Z|1|B5|C|2715
*
7O7Z|1|B5|G|2720
7O7Z|1|B5|G|2721
7O7Z|1|B5|A|2722
7O7Z|1|B5|U|2723
7O7Z|1|B5|A|2724
7O7Z|1|B5|A|2725
7O7Z|1|B5|G|2726

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

60s ribosomal protein l41

Chain Bp

eL43